General

The three canonical workflows are compound screens, genetic screens and learned embeddings. This section holds the steps they share: loading data, quality control, normalization, feature analysis, and the pitfalls to watch for.

• Mantispy in ten minutes
• Bring your own data
• Quality control
• Normalize, select, aggregate
• Plate artifacts and corrections
• Is the screen any good?
• Choosing a readout
• From a CellProfiler run
• Published profiles and JUMP
• Bringing your own embedding
• Images and segmentations
• Which measurements moved
• Pitfalls