mantispy.get.features

mantispy.get.features(adata, object=None, feature_group=None, channel=None, key=None, canonical_channels=False)

Names of the features matching every filter given.

Parameters:

adata AnnData

Object to query.

object str | None (default: None)

Exact matches against the parsed var columns of the same name.

feature_group str | None (default: None)

Exact matches against the parsed var columns of the same name.

channel str | None (default: None)

Matches any component of a multi-channel value, so "DNA" selects "DNA|ER" colocalization features too.

key str | None (default: None)

Restrict to features where this boolean var column is true, e.g. "selected".

canonical_channels bool (default: False)

Compare channels through canonical_channel, so that channel="DNA" also matches a dataset whose nuclear stain is named Hoechst or DAPI.

Return type:

list[str]

Returns:

Feature names, in var order.

Raises:

KeyError – key names a column var does not have.